Scaffold Ga0114340_1007045

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007045
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8729
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009514	Metagenome	316	N
F017297	Metagenome	241	Y
F034507	Metagenome	174	N
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100704511	F034507	AGG	MNNQKLEWQPLWDAMEANPSEWIETTQKMYWDMLESVPPRAQNSRGFLVGEPLSDNAEGFPIYACFKKSGDNYYAKNLTLSEFRAVV*
Ga0114340_100704512	F002707	AGG	MTQIEALTQCLVLALTAPNDQKAQQAAELAEQIAQGLTVDQVEQCKIAALDCLERVGV*
Ga0114340_10070452	F017297	N/A	MKVSTTKGFNMKITEQKNGNYTTFERISYNGYYIVKLYKRGELADKIMTDTYKAAREYLKCFNLIAKNG*
Ga0114340_10070456	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATFNQFQQIMSTLERHGFLSHDVDANTYHATDAGLQWSKKV*
Ga0114340_10070457	F048999	AGG	MLTITLHQKTDNDGWQSIKSLPIDSAQWGEIDRSWIDTLMQSGSMVITIGHTMYSIDK*