Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1006983 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5850 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012770 | Metagenome / Metatranscriptome | 277 | Y |
F020684 | Metagenome | 222 | Y |
F079979 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10069834 | F012770 | N/A | MNIEDTPPHNHCNDCNITFPDSFALIDHMMEEGEEFDPYYLLPSGFKLMLGSMLRFLFDNADKPDQIKMITQSTYVTLFASENGYDLVDELVEDMIVKSALQDFDRDLQQLLAEEPNDDEGGA* |
Ga0114340_10069837 | F020684 | GAG | VWTYALSTTEEATAVEVGYQRQKPYFGDPTRNINYSEGDLWEMWQHVVCAGSELAFARMVGKKDFVPHFNKWKSELDIPGLGEVRYSFPPIKGLRYTTRDEDNLIYVLTTGGLCNKERRNAPDWKGPDYVAVGWMYGKDCKKDEWKYNEKTWYVPIEYLNRMETLPNAITE* |
Ga0114340_10069838 | F079979 | GGA | MIREEEDDMTQEMRAFVLLELKQETTKLIEKIQAAKIPVTDEWTEGVNAGLEWAVRILKKDKSAS* |
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