Scaffold Ga0114340_1006983

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1006983
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5850
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012770	Metagenome / Metatranscriptome	277	Y
F020684	Metagenome	222	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10069834	F012770	N/A	MNIEDTPPHNHCNDCNITFPDSFALIDHMMEEGEEFDPYYLLPSGFKLMLGSMLRFLFDNADKPDQIKMITQSTYVTLFASENGYDLVDELVEDMIVKSALQDFDRDLQQLLAEEPNDDEGGA*
Ga0114340_10069837	F020684	GAG	VWTYALSTTEEATAVEVGYQRQKPYFGDPTRNINYSEGDLWEMWQHVVCAGSELAFARMVGKKDFVPHFNKWKSELDIPGLGEVRYSFPPIKGLRYTTRDEDNLIYVLTTGGLCNKERRNAPDWKGPDYVAVGWMYGKDCKKDEWKYNEKTWYVPIEYLNRMETLPNAITE*
Ga0114340_10069838	F079979	GGA	MIREEEDDMTQEMRAFVLLELKQETTKLIEKIQAAKIPVTDEWTEGVNAGLEWAVRILKKDKSAS*