NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1006981

Scaffold Ga0114340_1006981


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1006981 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5852
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F003377Metagenome / Metatranscriptome490Y
F012767Metagenome277Y
F039989Metagenome162Y
F066715Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100698112F066715AGGAGMADNIISRKNRDIDITLHTATASATTLDMRDVAGAVVSFGTMSTNASTLQMWAGTTPAGTFRRLYKADGSVADLTLSASSTDGRAYALPDEVFGVEYLKIVSATTNSTGTVGVVMLKS*
Ga0114340_10069812F012767GGAVRGVTATISLTAFRADWMTHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPVRQRDPTTTEIRQACIQIQATWSDDVREDRRVTKTQLVSLKRIPLDSETREHTAYDGDADLWEANR*
Ga0114340_10069814F002540AGGAGGLPNYEATPAELEKYGGNLSIWDQIRLLQTWAPLVGYAQRFVQTADPYAKAVVVSDAAEWVASKTDAQVDDQLVRMLGDLLKTKEGEALVRWCLLQVEAAR*
Ga0114340_10069817F039989GAGGVRFLVCLAVVLIGCVATLPDDQGVSADMACETARMVTQLRHEIAPTPASDKCDNCVDGFIGDGKIKITCPVCKGTGKR*
Ga0114340_10069819F003377GAGGMTDAAKDTLYGIIERWGFPTLVAIACGWVLRADVLLPLVEEHRAFVKSLSETQREISKAVSEQTRLLYALQPRAGDMPQEN*
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