Scaffold Ga0114340_1006830

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1006830
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18831
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F029046	Metagenome	189	Y
F066470	Metagenome	126	Y
F093236	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100683029	F004110	GAGG	VTELHPIIYELAPSVAYAVHRRYKHWVEREDVTQECIAWGVTRNAYITEQMSVEDPKQLEYNQSRIAWQMKRAVERYARREKANKSGYQINDEVYYQTFTLGQLLPFVITSIIDGTVLEQMQEMINDGQPRGSSSPSEGGNLLASLIDIKKCYLKLDQKDQELLRMRHYDNATLQQIAAFLECAVSTADRRCTNSLRRLQDELGGETPWR*
Ga0114340_100683032	F093236	GAG	MGSRESVPSPYGPVRAGLTTSPITQDQRLLELLSSLESVVENLNYKSFTLYDMLNTAIEEISAVLSATQIEEAGTNETP*
Ga0114340_100683033	F066470	GGAGG	MTEIARRIESAKRSAVVYRNYRRARERAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTSEFMDPDSDTPPTGGGEGNQASSRADKGNDGGEA*
Ga0114340_100683038	F029046	GAGG	MQLQEIDTLQDLKLWVEENMPGARVTIDSAGDLVINTGLISTMGGYLHEREGDDE*