Scaffold Ga0114340_1006405

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1006405
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6649
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F022871	Metagenome	212	Y
F023324	Metagenome / Metatranscriptome	210	Y
F029029	Metagenome / Metatranscriptome	189	Y
F046331	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100640510	F029029	AGCAG	MSQENPKEIKDLFKKDYSRAMDLRGNPIGDICVCGSELFTAIVAFENGEICFYFLDGECVDCGSLVTLPTPIDDHGMDCD*
Ga0114340_100640512	F009064	N/A	MLSKEEVRVCTLLAVERWLTKFGSKDKPNYAQGKADGKLEPEINANIRANVCEWAVAKQYNLAWNTPWYPNALHVKRYPIADVGSNVEVRSIRTQDSIPFWSKDKGRIIIGTKCLDTEYYSTVEIYGYIKPEEFMKQEYYDGYINGWRIPLTNFKEYDVKTI*
Ga0114340_100640514	F023324	N/A	LSGITDPKQLGAAALAGLAGPVLKWLDPSATEFGRGSN*
Ga0114340_10064052	F046331	AGGAG	VSHTEAPISITIKTAAGSLVTVRAENGTELDGLVAQGLDAITSATMELEKAIRGTIPTPMTVGQVASALGASISPLDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTTDAAWNTFVPEQVK*
Ga0114340_10064057	F022871	AGGAG	MSELENAWDSDEEFWDFVGENKQMVGLAISDGQGLDILNALRDVYVTIEKEPESAMRMLTLLGTVIYASSIGEGKQFTDEIQVVSAMEQFDNSIKEILDEESR*
Ga0114340_10064059	F008296	GGA	VSEAWVQEYDLLVSSLASEYYRRYPMLEAEDIRQTLWMWFVTHPVKYKEWSKLPEKDKEKLIAKSLRNAAITFCEKEKSQKSGYDLLDLYYYDPSVIEAFLPSIIGNSYEIPNKIKDLNFKVGKGEVTDGNNWLVLRSDIEKAFNQLAEAKQNILRLRFSTDNCEWNELGKELNTSADGARKRVERAINSLVRNLGGWRTFVDIDNIEAEEDNEPRES*