Scaffold Ga0114340_1006371

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1006371
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8900
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y
F024305	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100637114	F001731	GAG	MTLYNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNLELINLDHSNVLIQINDSLTIELQDSTATFVPIFGGSVVDVGIAVAEVGSVDYAQRINIIALGALARLPKALTEGVLSDDFDGNQIYTILKEVLFLSWQEVPQALTWATYDPTTQWQDAENSGLGEIDQPGNYELENRSSDITDVYSLVSALATSGLGYIYENAQGQISYADSTHRTTYLATNGYVDLTANQALASGLSIQSRAGDVRNTITLRYGNNSALEVSAVDSASVGLYGQLAQIFTTTIKHAADAQDQADFYLALRAYPRFNLSNITFELTNPELDNADRDDLINVFMGMPVNLSDLPLNMNSGDFLGFVEGWTFSARYNQVSVSLILSPIAFSLQAMQWNDVPVVEQWQTINPTLDWINATIVA*
Ga0114340_100637120	F024305	N/A	LMIDIISTMPDGYEVGDVNQPQSLEVGAGKYLIADLQVSTYYTN*
Ga0114340_10063714	F000903	GGAGG	MINRVEEVQCMIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKRLGYEYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRHDRDIAVLVTGHSPKLHIIGWMPVAVAKKPRYKNTSQNNWTIPQTNLQPIETLARSNYAHPVI*
Ga0114340_10063715	F000403	GGTGG	MSDYMEIINPQTRTAKLMYQGKIVEEYKIEQCDKCSKLMKFDKFGYQKGYGGENVIWFCGGCR*
Ga0114340_10063717	F001897	AGGCGG	MAFMDSYEGNKQRTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAYRNQLETEPAGVDYAHGYLAAYPEKMRRWMIEDTCTSALMRVMALVLGGTEKATQEVMAQVNDKAPKAMDYDYWSTKFGDVPSYQTREEAEQAEPIAWEIPEPKAIVPDSAPSCSHGSMRWNQSKPDAPKSWAGYFCSEKIKEKQCKPQWYVLTSDGTFKPQV*
Ga0114340_10063718	F005503	GGAG	MTTSEIGLFVLMAIACILWAICSYAVGYKEGHKQGYQRGKAVGRHISAQAVK*