Scaffold Ga0114340_1005322

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1005322
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6864
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F033405	Metagenome	177	Y
F034908	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100532212	F034908	AGGAGG	MKISVVVEVSMDDTYLKQVETWGVELSDHIATIIAEPMREKGLVVKTTALEIDHTMFDRLKKYQEHLAQADAYNDIEEEIIARACIGGKCDD*
Ga0114340_100532218	F012016	AGGCGG	MQETLKQPYAWATEEFNINGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKNEEQAEKITGVKSYRESTQRLTDAYNGL*
Ga0114340_100532221	F033405	GGAG	MISKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFSRTSETNSSRKGMKYSV*
Ga0114340_10053227	F031359	AGGA	MVDKKEKQIIVEQVIVTGYVKHSNGRKTKFEFNKDAFEPKDLESIFSGLGRIYE*
Ga0114340_10053228	F029418	GGAGG	MTQHQINEEKKRKFEEDIIEVAVAEYYEYVDVHKRTRSEKDAKMFYDAMRLGIVRGINFATNQYMQSLKNFEEGKKDGKD*