Scaffold Ga0114340_1005262

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1005262
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10289
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F056536	Metagenome	137	N
F059883	Metagenome	133	N
F077223	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10052621	F077223	N/A	MQFFAAFKSIIPEFHAFSDEDKRYNIGATWTDAQGLRDHHNLEMRYVRNSEKLALQGEPQPDGSWKYVEPNGSVHVISAERARHFMETTQAHATMMCGMLERLKEAGLYDKFIDT
Ga0114340_100526210	F001120	N/A	MTRKSPLSFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNASPNGVKGSVSIPGTGLSIPGIKLL*
Ga0114340_100526212	F001165	N/A	MTNSNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMDDDDDAMALMPEDLK*
Ga0114340_100526213	F007026	N/A	MEQTKKYPELSWTKNEYHQLQLALDALKNIRNREDRRHQMDANLDPRMADVLDEVIGMLSDELDYDPTPSEPGEPPMTMDEMHSAAWKEHQEMHR*
Ga0114340_100526214	F019817	N/A	MQATATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKDA*
Ga0114340_100526217	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTLGALMDEDEREQYMLAFQEDGPTFVDSLATKVANTF*
Ga0114340_100526224	F056536	N/A	MLCYYPYEGATERITWHEGESTMLHYQVQVDDYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQHISQLHLDTMAGTIF*
Ga0114340_10052628	F001807	N/A	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPLWQLLDLSDDE*