Scaffold Ga0114340_1005006

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1005006
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7124
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F004583	Metagenome / Metatranscriptome	432	Y
F011390	Metagenome	291	Y
F024112	Metagenome	207	Y
F027516	Metagenome	194	Y
F057375	Metagenome	136	N
F059958	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100500614	F011390	N/A	MSKENKMKIQTTRYGLCTVKKHKYQTNGNLALSLIDEDGCPVTYITTNIFPMAENEFCANIFNIGSTLWNDIVSSGLFEQTGEKVPSGYCEYPVCKLVKEVD*
Ga0114340_100500616	F004583	N/A	NGRSVTMKSTRNSDRLREIMFSTRHQIVSLKDIQMDMMQYDSKVANTIATQISALEEVFKHQLDLVNQAESVEPKRSGWFSGQIKTKEDRLANIMD*
Ga0114340_10050063	F004476	AGGA	MLFSKNGFKSVDTAESFIKEAMELGNKDVVLSVVHDNGVIDIVFSPSLDAIEAEVFHFLNDGTELKFTMPLKSLANDTISSLHLTSAIYAYLSEAFKVADMFRRTTRQSTDYAS*
Ga0114340_10050064	F027516	GGAG	MTYQDYVTKCEVAKTVFQCGVTAALIVENATPEQRVAWIAEDLKKLEADLAQIDKAFDEQDEVGDPFVDSVKEEVK*
Ga0114340_10050065	F057375	GAGG	MEQTVHFVDASEFFKAMDLGDFESQEFLDQFTYGDPLTEISLVAKTTFLQRLTKFIGECEDIAEKDVVMQSLKEFNFGLMGAIKHVNIEG*
Ga0114340_10050066	F024112	AGGA	MEIKDYDKERATVLNAFYCSVRSAIEVENVHNNHRIEWIENDFMVCKKKLEAIEAEMRVLLGDPFAEDVK*
Ga0114340_10050068	F059958	N/A	MATKKTENMTTLDAINKLVSFNQLYNNIVSKTVEVKNNLSEAEWALEDAKNEILRSVSDIKELGSNAEQREAKMSAMLDSKVKTVRTITLQYELAKAEEQKCRANLEFAKHLVRATEALAEA*