Scaffold Ga0114340_1004237

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1004237
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10911
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010397	Metagenome / Metatranscriptome	304	Y
F023346	Metagenome / Metatranscriptome	210	Y
F031030	Metagenome / Metatranscriptome	183	N
F039627	Metagenome / Metatranscriptome	163	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100423710	F010397	AGGAG	MNVSEFERTKPVITMQKINELIKLIDEERVKTEILYRDRVRSLDDISILLKEAKKSFVKGE*
Ga0114340_100423711	F001840	GGA	LESRKVFKNMKDQDSIFLICDCYEHGLLVEKFHDEEEVSLSLFERGLKGRTLCWSERLRWCWQILRHGKPWSDYIILNTENQKQLKEFLNECK*
Ga0114340_100423712	F031030	GGAGG	MGMFDDVVCKYPLPLPEDPKGYCNNKYQTKDFDNVMDLYEIREDGTLWVYDAMYEYTEGNPNGKSLSEKLPTRKEIKVWWQRIYPITNTVKLYAYDCDTNDKYDYWIEYNLTFLDGKVTEAKLVEFTATDNSERKKQHRNDVEYWTKRRNFEQTVCYRLFGKYYNKTITFICRNIHKSATWITYKIWKVEKFLKI*
Ga0114340_100423713	F006260	AGGA	MEKELTIKDKVTNPIIIQHDDLKFDGKNITIPGYYVGVLLEYIADYNLSKLSQADLDDHAAFRNFLLDIEEYKNGGN*
Ga0114340_10042372	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININTTVKAPTLRMHVKRSVTAGRYTVAGTQKTGKRGKPSIVYSYNTIATSTPVVTESTAN*
Ga0114340_10042376	F039627	N/A	MTASFYKTVYQRKFNELPRWKKLAIVEDSERNNWSGLLTDFVKAVIEEAEKEYANSRSTVSNTPVEYVKESENKFKKTIKKKS*
Ga0114340_10042377	F009604	GAGG	MNKCGCGNDIHPERYELGYKICLPCGESVAKRTQKYGYLHFGHKTAGSIVITSKKAFDNYAKVSYRKGKASNMAYASRLSTSF*
Ga0114340_10042378	F023346	N/A	MNNTISKNIIITYAKALRAIQKDQIDPYIDLIEKELIKVYPELEDRDDNALNWAYDILNAESNAEVVETLTRLEKIITDERKEKWVCSYCGKNTYNDDIDYLFGTNHIGCVLEEDIKNREHSDPDYILDARLQKISDIERKLDTYESELNKLHAELVRLRSDYDHEPTN*