Scaffold Ga0114340_1004104

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1004104
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13727
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005745	Metagenome / Metatranscriptome	391	Y
F007470	Metagenome / Metatranscriptome	350	Y
F015208	Metagenome / Metatranscriptome	256	Y
F015988	Metagenome / Metatranscriptome	250	Y
F017484	Metagenome / Metatranscriptome	240	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038479	Metagenome / Metatranscriptome	166	Y
F038643	Metagenome / Metatranscriptome	165	Y
F043940	Metagenome / Metatranscriptome	155	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10041041	F038479	AGGA	MTSLTLEQKIIKAAHLVANGELVSFRGASAETYARVMRLANRIEQEREFPQCPCGECD*
Ga0114340_100410410	F015208	GGGGG	MYKISVAYDENAPHWSKEYSDELNAHEEFAKFVDWGFAEEYATINLFTPSGKCYTKIFHRNGKVVKR*
Ga0114340_100410414	F038643	AGG	MIDTTNWVKYPFSVDGVDFISMLDPQGSMYQRVQTVPTAIFNSMNEGAIRELIGKVSLMSKSEIQTELDRVNAGFGQAYLALA*
Ga0114340_100410415	F003663	AGGA	MLATAIELLEATKSSVFDEDIMGLAGEIHTRRNELSDEIFAKYLFMYSAALSSKVADRITQILLTETQLKEMLEVLDEMDNLSETILEENE*
Ga0114340_100410418	F043940	AGG	MKNRFRVEIYDENKANDITIYSEQGVDKEYLTELVFSNLNNFFGNVRAYVYDNLKKKKTTAVYLPEQIVNRNRPRIPTKIEIGWPS*
Ga0114340_100410424	F000311	GGAG	MYFELTAPDRLSMEMAYWDAQITGLDPVAIGPLTFNIGTGSIEKVSRIRDKFNLVESYVSDYEPTGYTRR*
Ga0114340_100410425	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRQWAESSDEGQVYDDIADRIEFGTVDYDL*
Ga0114340_100410427	F000450	GAGG	VGNRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVIAARPRWNDPAYATRISISQIIGNDWSMETGFGLHVNEISDNEHKIAIVDWEQQTFSLHEEDDFRNTENKVRGMKNEAIFTMDLSTFCEKYALEEMLVN*
Ga0114340_100410429	F000868	AGGTGG	MSFLENENQMVIDAIYQEIGEQLVEDWVNSNLDEGQMYADFRFAEMSNDNYIKGRFNQFYDLKPEDQYYLEWDEEA*
Ga0114340_10041043	F057310	AGGA	MKITYSIWQGSIIKGTGFTANKMSEVMATIKELNSTDVKPKFEAFISKVEQETK*
Ga0114340_100410431	F015988	GGA	MNELIEYIKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMSGQILSARHFLSVADDILAKTKEN*
Ga0114340_100410432	F005745	AGGAG	MQTDPTPLDERLQRMVNLKVPGIDIMHGELKMRMLEAEAELTEAQRIEEENDYSDAMESMERKYWEGYYDALVLCYGLTYDISFAIADKEAAE*
Ga0114340_100410435	F004666	AGGA	MTSKREYLVSKGITVGKRGRFSGAAKTALAEAEKNGIKFTSEVKTPKK*
Ga0114340_10041046	F017484	AGGAG	MGYIEIFEMNENGAGWVSLENASADTKLDLELAILTKSEMKMLCFKCHVEIPRGNVCVNHKNVKGAIYFD*
Ga0114340_10041049	F038205	AGGA	MVNNLKEIIAVACDECGGAGFLFWGDENNYDVEQCDCALDVWGL*