Scaffold Ga0114340_1003536

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003536
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10323
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F028150	Metagenome / Metatranscriptome	192	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100353610	F000671	AGGAG	MDKVLCYSCNKSKNKLTLKRSSLLPINLLMCEGCINLKLEPRWLIIISGRQNGSESVRDFILKKRYEGSEISASELLT*
Ga0114340_100353612	F000473	N/A	MFIDKNKNHFKHGINQWTGEPNKPVFYTQEMAKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFIQFEGTKKEMVIDYVAKVKRLLESYGVRCELEGVPSERILR*
Ga0114340_100353618	F078287	AGGA	MPYNIKQNTAGCRGFAVVNDKGELKGCHPSKSRALAHQRALYAATANESKVKKTILGEGKSWLN*
Ga0114340_100353621	F028150	AGGGGG	MNWLKKRIIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAVWFLTIGIRERAEKEEE*
Ga0114340_10035364	F008814	N/A	MANITVLEEIIKEVSAELYQKWYNSVPESDKNEEASQAMAKNAGETTFFVIQSFMNKFNAAAEELKDK*