Scaffold Ga0114340_1003382

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003382
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9711
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (32.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031848	Metagenome / Metatranscriptome	181	N
F039944	Metagenome	162	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100338211	F072111	AGGAGG	MKKQVILAAAIFCHLFLFLFVDSLFEAPTKLKMWAFYGSSLLSVAVWAAYVVKDDLDGGGAA*
Ga0114340_100338219	F039944	AGGAG	MIRDLFLALALVLCFALGIAISSGMFGGPSDIEMRMRASEPVSLQK*
Ga0114340_10033822	F031848	N/A	MELLFNDLPEELSPRLKWQEKKGIRTMRRDDGKWVAYKTETRFNNSAENEVDAVIGLAKKLKLKLWNE*
Ga0114340_10033829	F056323	N/A	MADELKLPPAVVALWVADGHIPHIMKDGMPLFDPVAVGTHIAKQLNELNKEVDKQEPQ*