Scaffold Ga0114340_1003361

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003361
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11865
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F005092	Metagenome / Metatranscriptome	412	Y
F016958	Metagenome / Metatranscriptome	243	Y
F026861	Metagenome / Metatranscriptome	196	Y
F048943	Metagenome / Metatranscriptome	147	Y
F058095	Metagenome / Metatranscriptome	135	Y
F081257	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100336110	F026861	AGGA	MKLHEFQELIKAQRQAQQLTNLEKIATIIKTTEKENN*
Ga0114340_100336113	F005092	AGGA	MDKLEYALRQIANCNLCEGKGVFYFSSGDYYDFEDCECNTYGIIFDHDGEVIWDNGLLSEPELFLTQEAY*
Ga0114340_100336115	F058095	GGAG	MQYDYVITTYYDGELKNTHRINDLFDAVEVWQMCKDFGDAKDYATYNFMDLTGKMYTKTFYRNGDVSIK*
Ga0114340_10033612	F016958	N/A	MAGNTSSMELPDKESVYYFIDMYKKTLKKNQRVKVTCDLLSIDGYLQGTAPLR*
Ga0114340_100336120	F000684	AGG	MTLGGYTYQVGDLFTTSKTGVTGRIEKFVPQTKNVTKVMLRLANNQTRFAMVKTI*
Ga0114340_100336125	F048943	N/A	MRAHLISIEQDQEEVSKQMEDLDMNSKDYQELDFEYNWLAGQIIATRHFIQVGEEHAATVN*
Ga0114340_10033616	F081257	AGGA	MKTLTYTAEKDNSIVSVSNRLMVSEYQINDLLDSLVANGYTILTTLVGEGDDSQHWQG*