Scaffold Ga0114340_1003087

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003087
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14256
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F016784	Metagenome / Metatranscriptome	244	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100308717	F093528	AGAAGG	MTEDTTTHVITVVVQAGQKRNKVELFDFSGDEPVLLAAGEASNWRTALGEALSKISLSSDTPEKTINDIVKENIEGEGENE*
Ga0114340_100308719	F095162	AGTAGG	MSDAKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKKLLEKEKVSDEQEGKTWIDINGNTIEPVIPTRTKTRGATLTETDTNEGNNGGEE*
Ga0114340_100308722	F013279	AGGCGG	MQYDYRCPDCNGEITIERSIHEDPREPSCFHCHIPMIRKWDTPAITFKGKGFYSTGG*
Ga0114340_100308733	F016784	AGGA	MEFNTYDYVEPEFKNVIATGEYAAHYWFEQGWKACRLAFLLHNQVEKEAV*