Scaffold Ga0114340_1003084

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003084
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9474
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y
F044984	Metagenome / Metatranscriptome	153	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100308411	F005558	AGGGGG	MSKDLSWSELAELTHATQVEHFSFCMCEDLDPHEHPYADCPKGREQ*
Ga0114340_100308414	F093528	AGGA	MTEQTTTHVFTVVVQVENKRNKVELFDFSGGEPVALASGEAANWRTALGEALSKITLSSETPEKTVNDVAKEQAEEEGESE*
Ga0114340_100308416	F044984	GGAGG	MIDDAQRRMATAARKTIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIADEKQGKNWISIDGSTVLSMGVHTRATGADEFAHTDTSNQGTNESNDGGKA*
Ga0114340_100308417	F017972	GGAGG	VRTRHLQLVTHEHSDTIGKRESVSSPYGPVSPGSTTLLAQETLRANQEARLLELLNSLENVVESLNYKSFTVYDTLVTAIEGVRVALLDTQIESGGTKC*
Ga0114340_100308420	F013279	AGGCGG	MQYDYRCTECNGELTIERSIHEDPREPSCFDCHVPMVRKWDSPAITFKGKGFYSTGG*
Ga0114340_10030846	F018135	AGG	MTVQKVGHSGAYVISELLGEGSGEYLFTRTYYGYTLKEAKAQFKIALEGEGK*
Ga0114340_10030849	F003212	GAGG	MKDKWIVALEIDTYDGDPRHWDWEKLSTGSDVIKIISSDFKGRVLPIEGEGE*