Scaffold Ga0114340_1003079

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003079
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13648
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001280	Metagenome / Metatranscriptome	732	Y
F020166	Metagenome / Metatranscriptome	225	Y
F026561	Metagenome / Metatranscriptome	197	Y
F039131	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100307916	F039131	N/A	MEPSVYELENYFKEKYTKQILKEIKDFELPEHWNPKQVIDYITYKLDRK*
Ga0114340_100307921	F001280	GGA	MCVECGCESIGSETGIANIPGGILDVTRDGEAGLTLNMSATPEQRERFISGE*
Ga0114340_100307922	F026561	GAG	VSDNGTGMGTPPNPSPSGAVTSREATRKNPRQGLKIDTNKHGIRRETSLIPKAPRKTRPKKV*
Ga0114340_100307928	F020166	AGG	MNEPKIMKMDWRPLGYWPVYRDGRLEWEKDPDND*
Ga0114340_100307932	F000441	AGGAGG	MTNIYIDQQLNRAQQLLWGGSETENIEAHNIIAKLIKDRMSDKGE*
Ga0114340_100307934	F001019	AGGAGG	MSNYEPVLEILEMEYSCSPGGIDMFEVYDKSEIHGMPIYETESLTEAVQFCYNLGKDFVVRTLAEWHERELSYVN*
Ga0114340_10030795	F000473	GAG	MANDHFKYGINHWNGEPNKPVFYTEEMKKAIRQIQKPQMLLLDIAKYPDFLALRLYEDNFLQFEGIKKEMVIDYVTKVKKVIESYGVRCELEGVPSANIL*
Ga0114340_10030797	F000671	AGAAG	MDKILCYSCNKSKNKLNLKPSGLLNINLLMCETCIESKFEPRWVIILAGRQHGAEFVREQVLKKRYVGAEITASELIL*