Scaffold Ga0114340_1002850

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002850
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12515
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F012010	Metagenome / Metatranscriptome	284	Y
F038081	Metagenome	166	N
F069688	Metagenome / Metatranscriptome	123	Y
F076870	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100285012	F003038	N/A	MGLSTTDLGTGTGQPKTIAPGNHVLKINSLMLEDFQFIDGAKHLVLNVETEPISGFEGFWVDKDDESKGKHNGQIGRVKASQYAFADGETKSGIKIQRDRSMMIFMQNLCKALDINDWFIAQDGLHQTIDDLIIAFNKTADFKDNYLEFCVAGKEYIGKTGYTNYDMYLPKSEKGKYAYGEVEGGKVIQYTEAIHLRKTEIKDVKAFGDDDSFSIPSKSSSDFSLD*
Ga0114340_100285017	F012010	N/A	MTEIFNKFVQEDITPDGYYVLHCIKEKIVPNNFVNNSLQVTKLKRYDWLNEDLTLTNKSLIFMAEINSFFKKTKAKTLQDLLGTKFIDKIQEYIELFPNRKLSSGKYARTTSKNLETSFKWFFENYSYDWETIIKATEKYVDDYSIRNYEFMRTSQYFIRKQNIDKSFESDLATYCELLNNGFDEPETYFKERIV*
Ga0114340_10028502	F038081	N/A	MILNKQEIKNILNMLLSEDKENAIIAFSCLNNYASKKHLGNLLVLYQFGRISAEEWEKECKKVFKLIKNVLKLDSTDYRVPSSTVFSALMSNKCSKESIELYLELFTNQLSNNLYNMGYPTDKLEINVKIKDND*
Ga0114340_100285024	F076870	AGAAG	MEKTATNDIVLTKKFKKFLHSIAEEHYNMTSQNNDTTGLNHSLNYLWYMYHKGVNSGVYRPFIFMAEMHLLKEMGYMENDDIKNLNEMIKSEDTDNFYLGYLSLESLRNKRIKEHGAFSQGSKVYMDLVPDYASKILNTTLFKNALKN*
Ga0114340_10028506	F069688	N/A	MEDVNNIFTVDTVIEEGSYIKVTGEYQIPDSSLFKRGDILTEDKYNGHQIYVSFGTKDKDGKDGLILDTRSMHPAIKKPLDAVILGLNLFKIED*