NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1002683

Scaffold Ga0114340_1002683


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1002683 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10276
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Associated Families14

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002245Metagenome / Metatranscriptome578Y
F002935Metagenome519Y
F003422Metagenome / Metatranscriptome487Y
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y
F020171Metagenome / Metatranscriptome225Y
F033433Metagenome / Metatranscriptome177Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100268310F002935AGGAMDRRESRMNGYIGTIVDGQKLAEIANGIYALQYSNDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDIADYIRIFGDRLDSNCALWQSKMSVGAGTIAL*
Ga0114340_100268311F003422N/AMTNELISSKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTNQTKEEKMDTTIGSDAFHSPAVEYNPDLLVTYKIIHGYSDPEYTTSKVASLEWDLHNGRQNQKRLGLLESNINAVKNIITETYADSQDQDTLRDIAEALGIELIREVLFTATLEVSGTYTYNILEADEDFDLDSEVTDALYADSNNGNIEIDDTEVCHVREA*
Ga0114340_100268312F000311GGAMYFELTAPDRLSMEMAYWDAQMIGLDPAALSPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR*
Ga0114340_100268313F001043GGAGVSDYKDGFDDGYKFAREELMEKLSEIDILDIDSWVLDRLSEMIEGGTL*
Ga0114340_100268315F001125GGCGGMGDRANFGFKDSKDNTVFLYGHWAGYEMLKNLADAVQIARPRWTDEAYATRICISQLIGDSWNSETGWGITVNQLADNEHKVPIINWSEQTFTLMEEDLQTVVFSMDLTSFIAKYCSQLSMV*
Ga0114340_100268317F020171AGGAGGMSEQFIDTLAEHITGAMQQEIAEHLFDQWSAKNLDEGPDYAEHMFMQFASDGLKQQYNEYYGYIEGDEFLL*
Ga0114340_10026832F002245GAGMKVPHTVVFEAIIDLDKIPANLLPALIALDEKSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN*
Ga0114340_100268320F063705AGAAGGMESAYVTRSSTFIEYMKLHLISLRQDWEDTLNGAPLKENEYDPSDDYFEGAIAATEHLLSVANDIMISSNERYNNE*
Ga0114340_100268321F000263AGGMNEEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNE*
Ga0114340_100268322F033433GGAGMNDVKLEILEVNYSISPGGIDEFEVYSLDERDHSNPPIFSSPSLAESVQFCYELGKDFTVRTLAQWEERELAYEASR*
Ga0114340_100268324F009685AGGAGGMKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLIAKLIKDRSESIKN*
Ga0114340_100268326F013414AGGCGGMTKTREIKVAEQLVNLTEDHWFNPAILARHLTDQPFYTVDRIMELVAQIIRWESNRHKDELTTDTGIYNSGQTSEGLFLANELNETLTRLIKEYKWENLKLPVDPDKVIRRLPKVEEKTYRHSWLHDDSQSPTSIANPFI*
Ga0114340_10026834F004051AGGAMTVGNKTYQIGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADNLA*
Ga0114340_10026836F005741AGGMANRFRIEIYDANKANDLTIYSDQGVDREYLTELVFSNLRKFNGRVNAYVYDNVKKKKVTAMFLDESIANKFQSV*

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