Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1002683 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10276 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (76.92%) |
Novel Protein Genes | 14 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
Associated Families | 14 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001125 | Metagenome / Metatranscriptome | 769 | Y |
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F002935 | Metagenome | 519 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F005741 | Metagenome / Metatranscriptome | 391 | Y |
F009685 | Metagenome / Metatranscriptome | 314 | Y |
F013414 | Metagenome / Metatranscriptome | 271 | Y |
F020171 | Metagenome / Metatranscriptome | 225 | Y |
F033433 | Metagenome / Metatranscriptome | 177 | Y |
F063705 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100268310 | F002935 | AGGA | MDRRESRMNGYIGTIVDGQKLAEIANGIYALQYSNDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDIADYIRIFGDRLDSNCALWQSKMSVGAGTIAL* |
Ga0114340_100268311 | F003422 | N/A | MTNELISSKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTNQTKEEKMDTTIGSDAFHSPAVEYNPDLLVTYKIIHGYSDPEYTTSKVASLEWDLHNGRQNQKRLGLLESNINAVKNIITETYADSQDQDTLRDIAEALGIELIREVLFTATLEVSGTYTYNILEADEDFDLDSEVTDALYADSNNGNIEIDDTEVCHVREA* |
Ga0114340_100268312 | F000311 | GGA | MYFELTAPDRLSMEMAYWDAQMIGLDPAALSPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR* |
Ga0114340_100268313 | F001043 | GGAG | VSDYKDGFDDGYKFAREELMEKLSEIDILDIDSWVLDRLSEMIEGGTL* |
Ga0114340_100268315 | F001125 | GGCGG | MGDRANFGFKDSKDNTVFLYGHWAGYEMLKNLADAVQIARPRWTDEAYATRICISQLIGDSWNSETGWGITVNQLADNEHKVPIINWSEQTFTLMEEDLQTVVFSMDLTSFIAKYCSQLSMV* |
Ga0114340_100268317 | F020171 | AGGAGG | MSEQFIDTLAEHITGAMQQEIAEHLFDQWSAKNLDEGPDYAEHMFMQFASDGLKQQYNEYYGYIEGDEFLL* |
Ga0114340_10026832 | F002245 | GAG | MKVPHTVVFEAIIDLDKIPANLLPALIALDEKSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN* |
Ga0114340_100268320 | F063705 | AGAAGG | MESAYVTRSSTFIEYMKLHLISLRQDWEDTLNGAPLKENEYDPSDDYFEGAIAATEHLLSVANDIMISSNERYNNE* |
Ga0114340_100268321 | F000263 | AGG | MNEEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNE* |
Ga0114340_100268322 | F033433 | GGAG | MNDVKLEILEVNYSISPGGIDEFEVYSLDERDHSNPPIFSSPSLAESVQFCYELGKDFTVRTLAQWEERELAYEASR* |
Ga0114340_100268324 | F009685 | AGGAGG | MKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLIAKLIKDRSESIKN* |
Ga0114340_100268326 | F013414 | AGGCGG | MTKTREIKVAEQLVNLTEDHWFNPAILARHLTDQPFYTVDRIMELVAQIIRWESNRHKDELTTDTGIYNSGQTSEGLFLANELNETLTRLIKEYKWENLKLPVDPDKVIRRLPKVEEKTYRHSWLHDDSQSPTSIANPFI* |
Ga0114340_10026834 | F004051 | AGGA | MTVGNKTYQIGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADNLA* |
Ga0114340_10026836 | F005741 | AGG | MANRFRIEIYDANKANDLTIYSDQGVDREYLTELVFSNLRKFNGRVNAYVYDNVKKKKVTAMFLDESIANKFQSV* |
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