Scaffold Ga0114340_1002683

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002683
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10276
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013414	Metagenome / Metatranscriptome	271	Y
F020171	Metagenome / Metatranscriptome	225	Y
F033433	Metagenome / Metatranscriptome	177	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100268310	F002935	AGGA	MDRRESRMNGYIGTIVDGQKLAEIANGIYALQYSNDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDIADYIRIFGDRLDSNCALWQSKMSVGAGTIAL*
Ga0114340_100268311	F003422	N/A	MTNELISSKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTNQTKEEKMDTTIGSDAFHSPAVEYNPDLLVTYKIIHGYSDPEYTTSKVASLEWDLHNGRQNQKRLGLLESNINAVKNIITETYADSQDQDTLRDIAEALGIELIREVLFTATLEVSGTYTYNILEADEDFDLDSEVTDALYADSNNGNIEIDDTEVCHVREA*
Ga0114340_100268312	F000311	GGA	MYFELTAPDRLSMEMAYWDAQMIGLDPAALSPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR*
Ga0114340_100268313	F001043	GGAG	VSDYKDGFDDGYKFAREELMEKLSEIDILDIDSWVLDRLSEMIEGGTL*
Ga0114340_100268315	F001125	GGCGG	MGDRANFGFKDSKDNTVFLYGHWAGYEMLKNLADAVQIARPRWTDEAYATRICISQLIGDSWNSETGWGITVNQLADNEHKVPIINWSEQTFTLMEEDLQTVVFSMDLTSFIAKYCSQLSMV*
Ga0114340_100268317	F020171	AGGAGG	MSEQFIDTLAEHITGAMQQEIAEHLFDQWSAKNLDEGPDYAEHMFMQFASDGLKQQYNEYYGYIEGDEFLL*
Ga0114340_10026832	F002245	GAG	MKVPHTVVFEAIIDLDKIPANLLPALIALDEKSIQQMCKEATLHALGMSNVLPLANENNTWAEVTIAEGN*
Ga0114340_100268320	F063705	AGAAGG	MESAYVTRSSTFIEYMKLHLISLRQDWEDTLNGAPLKENEYDPSDDYFEGAIAATEHLLSVANDIMISSNERYNNE*
Ga0114340_100268321	F000263	AGG	MNEEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQDLASALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARNE*
Ga0114340_100268322	F033433	GGAG	MNDVKLEILEVNYSISPGGIDEFEVYSLDERDHSNPPIFSSPSLAESVQFCYELGKDFTVRTLAQWEERELAYEASR*
Ga0114340_100268324	F009685	AGGAGG	MKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLIAKLIKDRSESIKN*
Ga0114340_100268326	F013414	AGGCGG	MTKTREIKVAEQLVNLTEDHWFNPAILARHLTDQPFYTVDRIMELVAQIIRWESNRHKDELTTDTGIYNSGQTSEGLFLANELNETLTRLIKEYKWENLKLPVDPDKVIRRLPKVEEKTYRHSWLHDDSQSPTSIANPFI*
Ga0114340_10026834	F004051	AGGA	MTVGNKTYQIGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDNGERWTTVLADNLA*
Ga0114340_10026836	F005741	AGG	MANRFRIEIYDANKANDLTIYSDQGVDREYLTELVFSNLRKFNGRVNAYVYDNVKKKKVTAMFLDESIANKFQSV*