Scaffold Ga0114340_1002676

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002676
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10296
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N
F100477	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100267615	F054860	AGAAG	LNITIKNARINYHNSEETVAFNALLCNDKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHALVTAFREWCSNQPPVYDKESGNTYNFSADIFVNDCLTQHIGNQCELAVSL*
Ga0114340_100267617	F053301	GGAGG	MTVKEVIDLLDTIAQKEGYNTECIVEIEEQNYNTEAKVHTVCTNGYEDGSKKIALVGTKDDETYEE*
Ga0114340_100267618	F100477	GAG	MKSIQLSTIKKKIGAERFTIIRDVIFKSSIDRPSRGMTLQRDRIVNAIKDPETKKNLENLTAKVDWFVVDVV*
Ga0114340_10026765	F093847	GAG	LTINLRKTFARVVYFIEQSSKGKSRETILKELDLTEDEFQFLLNKMLEISELKDKDAVISSITILDNVFIGGVYVTSNNKTLLSL*
Ga0114340_10026766	F039139	GGTGG	MFLNAFEFTSEDIVTILRAHETYITIEQLAELTDVLDYDSIVRAALVYNDPDIQLKSALSQAEDLMIMDGLYITEPKRFHVDN*
Ga0114340_10026767	F060908	N/A	MTRKLDYTISETVTARSKNRILVPKKYIKYIGMNPGFVAHVTNLNGAFIVSACPTPESKKFMVDKDGAVRFYGNNSAYKIMIADNVVVLNEYVP*