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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1002304 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23073 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (79.55%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012327 | Metagenome / Metatranscriptome | 281 | Y |
| F035670 | Metagenome | 171 | Y |
| F035674 | Metagenome | 171 | N |
| F037689 | Metagenome | 167 | Y |
| F060611 | Metagenome | 132 | Y |
| F076887 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100230412 | F035674 | GAGG | MKPGQEACLRMAQYQYSCRNQDMMWRWLFTWAAWSDNVDFFSDPRMPVFKPKKPKRRWKHLTNAETLGIIKQLPNWQTDHLNTFIFKVLVEDKLKEKNA* |
| Ga0114340_100230416 | F035670 | AGGCGG | MNEPELNIWEKAMGWRKRQMVKSQINEVSQKIRNDTIEEVAKEIEKMTAFGQVTIDSFTVYIRSMKR* |
| Ga0114340_100230417 | F076887 | AGGAG | MRPLSETTARQTIAMMRSIASHKPITPFHLMAADQMEQLLEEVLKYRKGKK* |
| Ga0114340_10023043 | F037689 | AGGA | MTKPKTIKDWQKVCNNLNAALQSAMKHEDELNDDIEHLEKQLLKLEEQLTMSVGVIKYLELQIVRSNPV* |
| Ga0114340_100230439 | F012327 | GAGG | MIDKYLKLLASKIDDKVSQLQMSIADGKAEDFPEYKRMCGEVKGLLTARLYIIDLQERVTNDDDDE* |
| Ga0114340_10023048 | F060611 | AGGAGG | MENDTTKRFPRTMHEAFNCDSDPISGPYGKQPFWPVYAIFFIVIIAGIVVFWSRV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |