Scaffold Ga0114340_1002293

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002293
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11284
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F084151	Metagenome / Metatranscriptome	112	Y
F099184	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100229311	F012770	AGCAGG	LSEDEFTNNQCNDCGKVFDSSFELIDHVLDDDEEFDPYYALPSGYKLLLGSLLRFLYGNADNPEQIKHITQSTYVALFAAENGYDLIDELVEDMVIKSALQDFDSSLKKLLEEETKDEGEE*
Ga0114340_100229314	F008237	GGA	MNLEWNRIEPWQYVVDAVASEYSRKYEEIDIADIRQSLYQWFLEHPVKLDTWEAIGEKDAKNLIYRSLRNQALDYCQYWMAKSGGYETSDLFFYEADMVEALLPSVLRGEFNVTAKLNLSHTGKQSAPAEGGNLMAMMIEIDYAYWKLPNPDRKLLFFRYVESMDFGDIATELGLTSEDTARMRHKRAIRKLINKIGGFKPYRDDDFAEPTED*
Ga0114340_100229317	F003658	N/A	MFDLQGEPTFACICGCLMFEITVMWDREDRTIGWYDLKQKCKECGTLTTAPTPIDGEM*
Ga0114340_100229327	F084151	AGGAG	MKITYSLWQGSRLLSIYNTATNIKEIDEVVTELNASNLAKVQKFSANIQEIKVSN*
Ga0114340_10022938	F099184	GAG	MVEVKLSPEEIQSALQFVEAMREDKKEYNVVDKKFDAKNTSWAVNLMGYLGELAAAKVYKTTTDNRVLTGGDAGHDLVVDDKTYQVKTTVTKELIFNSKELFSADYAILVTLIGDRTQPHIDSRFIVWGDISREDFLKVCKEKNYGYGERFVCDVNALNQVVSG*