Scaffold Ga0114340_1002277

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002277
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14249
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021263	Metagenome	219	Y
F022373	Metagenome	214	Y
F047485	Metagenome	149	N
F056318	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100227711	F056318	GGAG	MFKHITPHPWTAHGSTVWGYENEHGQPQVGSCVNKNLPIATQRANARLIAIAPQMYEIIQKMQSEDAQALVRYMEKEIDHAD*
Ga0114340_100227731	F022373	GGAGG	MQPKVILEFLYPDDEDRLLFAVKGPEMYKALTNIKMAVTGSFHTKADLNAVLDRVRDLTDQIFEELGE*
Ga0114340_100227732	F021263	AGGAG	MTNEEREMDLNIADLEAENRRLKKIEQAAQAVVKSFSNSIDYDTWDKALDALESILKEK*
Ga0114340_10022775	F047485	AGGAG	MNGLDAHYSALWVENERRQAEGKPTAKYTITVAVEGFVEIDVEATSHANAVDQAMAQLDDRDWDIVVTEKAVADVEKWK*