Scaffold Ga0114340_1001999

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001999
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12231
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (57.45%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F024768	Metagenome / Metatranscriptome	204	Y
F030059	Metagenome / Metatranscriptome	186	Y
F043358	Metagenome / Metatranscriptome	156	Y
F074911	Metagenome / Metatranscriptome	119	N
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100199911	F043358	GAGG	MKVYDYRIVEDLNLKTLKPHFLIQYYHLTEKKYHLYSNDTFQTLQEAQEAIRLIRKYKEPFYHYVE*
Ga0114340_100199914	F074911	GGAGG	MILNEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYEAL*
Ga0114340_100199915	F008943	GAG	MKNFNEIDWAVLSVFFIIIVAATAITYSEQQQRALFQQTYNKNLECRQALKDQTVVRVNEICGTVPVIGDFVK*
Ga0114340_100199916	F101046	N/A	MDFTDYGISLEPEELRDILTGKIGFRKCPDCQGEGESWTLHYVLADDPDQDNEQFKEVSAQFAADFDEDNLPPQYSFGECYLYKCDTCKGVGYVPIEGY*
Ga0114340_100199920	F030059	GGA	MNSTLNKNLTLIQDVANKALEEYINSTEPKERFSGVNYADLEVVDVWVKYSIRDEDLYYGVLIEEASPTAYELREYVVGYLKENLPDYLSDFVYVETEW*
Ga0114340_10019996	F024768	GGAG	MNYETEIIDGHKAVVRHFFKPHEIQVGSRWARADGSKGYVTVEGFNSYGDTDPWHEVVYSWEENGVKKIWQKENFIFQCRYCLIVE*