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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1001925 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 89784 |
| Total Scaffold Genes | 136 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (52.21%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025754 | Metagenome / Metatranscriptome | 200 | Y |
| F049483 | Metagenome | 146 | N |
| F056418 | Metagenome | 137 | N |
| F070858 | Metagenome | 122 | Y |
| F092044 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_1001925111 | F092044 | AGTAG | VVNTEKEKTMSELMQKLVERLAEMFPGSGYQSRLEAYIAGRRPCDVFDVERFQKEFSQEFKGFL* |
| Ga0114340_100192517 | F056418 | N/A | MEYEASRNSHYQRYGEKFISKFTTRCCDNLEGMRALLAAETPPKKMVFFNNYLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKSRLAAWITTQGNDVAASKSLREFLDIEIRPTRVYWWRNDVTESYYYIEHNSLQYETMLSMVCPGMVRKTLPIVKKQ* |
| Ga0114340_100192523 | F070858 | GAGG | MPIVIGPGIEIGPGVTAGGGFAPTVSLIYDLDAANYSAVPTNGSVTEGTGTTGERTLTVANAGGSISWQADNGGLFRKSNATGTDSIRGGPNWSTGQSYSVFATYKLSVTSSGRLLNTQSEATRDWMMGAYNGFVNAFYPNYAVNLPSSGTNAVWNFICFYSH* |
| Ga0114340_100192582 | F049483 | N/A | MDILTQKEPQMEITITVPKSAIEAVKEYAKELTGKTPSKKELKAFFEQDIPGYYSDTFEEGIEGAVDNYFG* |
| Ga0114340_100192583 | F025754 | GAG | MYFYILPGPYRLGFGITSNHERRAKDYTGAWGGEAEFKYLFEGPTAHVKRLENVIKTIHRDMLWRLDEWQTEWLDNGWSAELVKYYVQREFKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |