Scaffold Ga0114340_1001813

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001813
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30030
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (9.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F031032	Metagenome / Metatranscriptome	183	Y
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y
F056429	Metagenome	137	N
F058003	Metagenome / Metatranscriptome	135	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100181316	F058003	N/A	MAKKNLNVNVDTDNIDVNVERKDGELKVNYDSKKLDVQVNKTADNVEVKVDAQGGLLKFVGNIIKKVLLRRLK*
Ga0114340_100181318	F039051	N/A	MLPIDKFLQTIKKHGATGVLALWLFYTHTEVQDLKARLYACYGKDKHLATRQIIDTNNFAIVPKDELEIE*
Ga0114340_100181343	F031032	N/A	VSLTLSSDYYIVFMNPTKHKQEWNALRLIMKVSEINYCLFIDYKLYSLEIHAVEKDEFEIYKYNPN*
Ga0114340_100181346	F088280	N/A	MRNLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGLAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYRLDTCSRGLGRLLNYKRKLHKLAE*
Ga0114340_100181347	F033727	N/A	MREQAKVLSEANEVTRSMVRFYLQKHEISLNAFSKEVGIRQPNLHKFLNGSNLSSRSIEKLGEFFSK*
Ga0114340_100181350	F056429	N/A	MNEDLKVMRYYKNTTREQIVQIKDFKKDKVWYETIRQHETNPITEFCCSVERFKRLYIKTK*
Ga0114340_10018136	F025465	N/A	MDELTIITGKVNLDTTYLKIKLSLEEIKQKHGTRTDLIDSMERSLADLQEVKISYDAIEKELRVALQQNFRLEKLLMEEKFKVKDLEIQLKMKDATL*