Scaffold Ga0114340_1001783

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001783
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13070
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F010682	Metagenome	300	Y
F017472	Metagenome	240	Y
F025263	Metagenome / Metatranscriptome	202	Y
F051095	Metagenome	144	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10017831	F017472	GGCGG	VAKHKGSDDFGWHTHQPKKSNFGFKAVEGASSRHQLSTPMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYS
Ga0114340_100178310	F010682	GGAG	MVYTPQTNWKYDKNLYHPIQSGPQRTGDDLDLTDTYLVVSSGFVTPLGFTQTWYGVNDQGADFGRIPVGPPNLSGYFTTEWKAVPPAVSGYWTNYENTLPHASGLLDTYVGFRAQGLYSTANATVQTAFGPRPGLRNFGTHTWYGEQIPDNQLYSPFQTPASNDNTIEGGGITGGGVTHPTNQSPTLTNPTNDTSGSRAAWVYHYPIYCQSLTETRYTGVPGQMGSPARNSYRGKSLRYAPNYGSVYGVLGEGVRNMVRTFSPGTKI*
Ga0114340_100178311	F051095	GAG	MSSQIERALTMFFEDPEASIACFSGSITESLTHPRGIKKVIPYLIKASIVGWMLATFVSPAIEERFKLTKNESIATSFIIGYAGIRILAAAERLAEKELERRVGVNKNDEIS*
Ga0114340_100178317	F077254	N/A	MDPYARAGFGFAKAYQMNMQAADAQRQANAPSSNAFAQILNDEETDYTYSPTPQAPAPPDDQYTGMEPDGGSVLEQTNGNSLMRAKHKVAKYLQERD*
Ga0114340_10017832	F001215	N/A	MVDRPFFRGARINNSTPVVTSPSNPDFSQLVQLVRVGDLPSEDGALVEDIFVVSSEGYPDRSGVRTAAFGVYVYAPNQAAPSTSTPLLVGKFQVGLSGSTDGLIQRVELPATVAPTPQVGDTTTVYPIERGKSEAMYLEKGYILCVGYLGNGPAAVSGGLSSSGVCIMAQGGFY*
Ga0114340_10017838	F025263	AGGAGG	MTINPNQISVAKIYPGNYTNVLRYWHEEKTVQFENANGVQTSYTNQPVGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGQNGANQPFLNANVIIPSPDFHKDVRADITNGITVPSGAFVYRTSLRVDGGDVVSSGVAGGAAAPQLTLIPAVGQGLRNTTTVVSGQFGTSVTGSDSRIANGSVASTNIINSSSLSALTADTQWKLFTTTNLGGVAASGLAQGSGIYDPRAGAGKLSGKNKALAICEVCWIVPDQPPERSDLALQPAGVIESQIYTSTSPT*