Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1001722 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28846
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (89.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28846

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (89.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F025943	Metagenome / Metatranscriptome	199	Y
F032271	Metagenome	180	Y
F060868	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100172213	F025943	GGAG	MDKVYAVIENNTVVNIVVGVDEEVLTANPDKYIEYTDGWDYNNGIDGGVFFPVPAEDN*
Ga0114340_100172215	F032271	GGAG	MSKPTIRIHNAETNEIIDREMTDAEFAIYQAKQATLTARAEEEATKATEKAEVLAQLGITEEQAKLLLG*
Ga0114340_10017222	F001094	AGGAG	MKAQAIAIASTYFRAAFAAVTALYLAGETEPKTLALAFVAAFAGPVLKALDTNSPEFGRGSK*
Ga0114340_100172220	F001599	AGCAGG	MQETVSVAWCDNGMVDGKFMQGVTDVLLKSGIKFESTLRSQGNQIARQRETVITYWYEQNKADWLLWVDSDVVISPEGFLKLWNQKDKDERPIMTGVYFTTDNPEEPLMIPMPTVFKFTENKDGGFGLSRVHPLPENKLIKVDAAGMGYVLMHRSVVDRIRKEMPDAQFFMEMGRGTKFIGEDIYFFALCEKAGIPLYCDTSVLAPHMKRFSFDEHYYKAMTKGRK*
Ga0114340_100172226	F001706	AGG	MSLHRIQTHPEYVEGCFGCKVGTLEMGTGDASRDISDKKWTSELNEYRKARAEGIQPAGTTRRHVEEARKASETLGKAYDADSMPKTKDITKESVAVMKQIGQI*
Ga0114340_100172227	F060868	AGGAG	MANWTFRPPTVEEGPAGGHRLFYFYKLKRGISVVKSGSTWSQVRYIVDEDANNYDAIYRGGYNHTVDDAMKAELIAANIGVDETNFTAQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1001722

Overview

Ecosystem & Geography

Associated Families

Sequences