Scaffold Ga0114340_1001631

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001631
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16716
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003582	Metagenome / Metatranscriptome	478	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100163110	F072349	AGGGGG	MDKVLCYSCNKSKNELSAKKSSLLTINLLLCKSCSENKIEPRWIIILAGRQFGPEYVKDFIAKKRYVGPDITASELLI*
Ga0114340_100163111	F105192	N/A	MNISLTQILVTIFAASISGIITALVNAKKSKKERLVNAADKAHDMLIIEIKDLEIKLYKLEKDLTEWKEKYFEALQELIKVKSELEKTLITLAHLEIHSEDISHD*
Ga0114340_100163116	F008814	AGGA	MDKKLTVLEEIIKEIGEELYQKWYNALAVEDRTEESSKAMSVNAGETAVWVIQTFMNKFNKAADELKGE*
Ga0114340_100163124	F021988	N/A	MSNNFKKEDGTGMVPPANAGAPAGAVTSTNTPKKNPRQGIKIDRNKHGIRRETSLIPKPPKKTGRRKV*
Ga0114340_100163130	F020166	N/A	MKEPRIMKMDWRPLGYWPVYKDGKLTWEKDPDENVN*
Ga0114340_100163131	F006846	AGGA	MLIEFVERYLMRPKRLREAIEAVVHENDELLRRLSEYKEEGPTNLTWAEGDRWYGWTYDSNAKRYYFDDIGNESLMGLWEDQWLREAESVDNKA*
Ga0114340_10016316	F003582	N/A	MKKYKVNIEIEAEIEAFDEGDARDYANDIFGIDDEIKKVNIVEIKLK*
Ga0114340_10016317	F066776	AGG	LLHLTEKGVDLLIKRSYTKSQECFWNNYDLVIWKKDNGGYTDLKGMYRKDAWGKAEKISVNREGIWKLPKQYVKYFK*
Ga0114340_10016319	F011394	AGGA	MFIDKTKNHFKYGINEWTGEPNKPVFYNKDMAKKIRELKKPVSNLQMDIVKYPEFLAIRLYEENFAQYDGSNRVKVIEYVEMVKNILESYGVRVELEGKPGGKNHG*