Scaffold Ga0114340_1001615

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001615
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34684
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (80.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F002653	Metagenome	539	Y
F005233	Metagenome	407	Y
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y
F091934	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100161513	F002653	AGGAG	MNYEDYEGSMSEAELHRRVTAMSDEEQAHFKLLIHKLVMCYGEGKAQGVVIVGRAEDQMAGVVTLNCNEMEASQLMLAANDFFGFLNLMDAPPKENFN*
Ga0114340_100161517	F021488	GAGG	MSDTLFNKEDFDNIFGTPKVQIKPDPMIRNAVLEEVALEFDAMRIAFGDTAHSFATYVRDMKT*
Ga0114340_100161521	F010672	AGGAGG	MPDIQTAFKSALTRTLTEWDDDEGTPVPVPSSKQPVSLSSVPTQGIPMKKTFNVTNNVSRVTFDYIKNNPGSTRKEIITALEHEGFGGGSVSSLIAQMRRNKMIHETNGLHYADINEYRPIKTLKAINKEKEAQAPKRKYEKKAVTGIGALLREKLENMPEPSQDALDAAAYAMGTARVDVNKRMVSLVRTQDPDEIIKRLTVFQARELYDRLKQIFSA*
Ga0114340_100161522	F023041	AGGAG	MQNTPYDTGKVKIGLTYTPPPPECTPESDWIQGILLGDKQGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0114340_100161527	F019448	GGAGG	MTKTQMVEACADYEVNWFFDREPAEQREVFRHIMLHGIRGFKNYPDDSLFTVCVDKGVFLMEE*
Ga0114340_10016153	F002286	N/A	MAYSQKIIDEVAKTPKSLGNQLGRWAIHLDFPVTKIAYALGVSRQTVYNWFTGTEVFVAYRDRVEFLTHIMKTSRTADEAWRKICTEYNLDPSQRKS*
Ga0114340_100161534	F091934	AGGAG	MRSFIQPRIKEVGIVTIRGRDFHMQTISYGSHHQVHIFRKGALHLRGMVFETQALYDQWKNGMHQLDLPF*
Ga0114340_100161537	F005233	AGGAG	MTCAITEKKCTLTPTRQQVIDAKVKTAEWLKNLELEDEEIESKAEQEAARKSFASLVTGQPVGNTQQALANLKTPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERVEVKKTEMSDVELETRIKEKLNRFMGVIDVIDVTADKDEA*