Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1001615 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34684 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (80.95%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002286 | Metagenome | 574 | Y |
F002653 | Metagenome | 539 | Y |
F005233 | Metagenome | 407 | Y |
F010672 | Metagenome | 300 | Y |
F019448 | Metagenome | 229 | Y |
F021488 | Metagenome | 218 | Y |
F023041 | Metagenome | 211 | Y |
F091934 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100161513 | F002653 | AGGAG | MNYEDYEGSMSEAELHRRVTAMSDEEQAHFKLLIHKLVMCYGEGKAQGVVIVGRAEDQMAGVVTLNCNEMEASQLMLAANDFFGFLNLMDAPPKENFN* |
Ga0114340_100161517 | F021488 | GAGG | MSDTLFNKEDFDNIFGTPKVQIKPDPMIRNAVLEEVALEFDAMRIAFGDTAHSFATYVRDMKT* |
Ga0114340_100161521 | F010672 | AGGAGG | MPDIQTAFKSALTRTLTEWDDDEGTPVPVPSSKQPVSLSSVPTQGIPMKKTFNVTNNVSRVTFDYIKNNPGSTRKEIITALEHEGFGGGSVSSLIAQMRRNKMIHETNGLHYADINEYRPIKTLKAINKEKEAQAPKRKYEKKAVTGIGALLREKLENMPEPSQDALDAAAYAMGTARVDVNKRMVSLVRTQDPDEIIKRLTVFQARELYDRLKQIFSA* |
Ga0114340_100161522 | F023041 | AGGAG | MQNTPYDTGKVKIGLTYTPPPPECTPESDWIQGILLGDKQGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA* |
Ga0114340_100161527 | F019448 | GGAGG | MTKTQMVEACADYEVNWFFDREPAEQREVFRHIMLHGIRGFKNYPDDSLFTVCVDKGVFLMEE* |
Ga0114340_10016153 | F002286 | N/A | MAYSQKIIDEVAKTPKSLGNQLGRWAIHLDFPVTKIAYALGVSRQTVYNWFTGTEVFVAYRDRVEFLTHIMKTSRTADEAWRKICTEYNLDPSQRKS* |
Ga0114340_100161534 | F091934 | AGGAG | MRSFIQPRIKEVGIVTIRGRDFHMQTISYGSHHQVHIFRKGALHLRGMVFETQALYDQWKNGMHQLDLPF* |
Ga0114340_100161537 | F005233 | AGGAG | MTCAITEKKCTLTPTRQQVIDAKVKTAEWLKNLELEDEEIESKAEQEAARKSFASLVTGQPVGNTQQALANLKTPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERVEVKKTEMSDVELETRIKEKLNRFMGVIDVIDVTADKDEA* |
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