Scaffold Ga0114340_1001452

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001452
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28226
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (72.31%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002071	Metagenome / Metatranscriptome	596	Y
F008305	Metagenome / Metatranscriptome	335	Y
F010085	Metagenome / Metatranscriptome	308	Y
F011299	Metagenome / Metatranscriptome	292	Y
F023344	Metagenome / Metatranscriptome	210	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038669	Metagenome / Metatranscriptome	165	Y
F043387	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100145227	F038669	GGAGG	MSDELSPHLQKLVDMGETGTNIMHGELKNWMYECETKLLDTSELHDNPQYQYLSGRLDALTDLYIMTYNLAFALNERTAKNG*
Ga0114340_100145229	F008305	GAG	MLGYTYRDIQEFGIALTAAIDSATDPKVKQGLLTIWDFFEGLLAEGYVQGESY*
Ga0114340_100145230	F023344	AGGA	MAEMFTDNMNQMLLDAIQADIEQQLFEDWSNNNLDEGEEYAEFKFMEFAPDNVRQSYNEYYGYKEGDEYFLC*
Ga0114340_100145231	F000450	AGGCGG	MGDRANFVFVDGAGDTICLYGHWAGYNMLGKLADAVIAARPRWNDESYATRIAISYLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKDQTFSLHEEDDHRNLENKVLGMKNEAIFTMDLTAFCEKYALERLLV*
Ga0114340_100145233	F001043	AGGA	MSDYRDGFKDGYKFAREELIEKLREIDINDIDAWLIDRLSDMIESNKI*
Ga0114340_100145240	F002071	AGG	MKDILEVGQTYTTTQSGITGIIKAIDNHPSGTYRILLDVNGKERWTSAYAN*
Ga0114340_100145243	F011299	GGA	MMTRKHFNEIAAILKYNSDKTHPAIFSKMVLDFAELCAKENSNFNVNKFYEASGYDIPQFNSR*
Ga0114340_100145244	F024549	GGGGG	MFKLFTYYDGNLEFTHQFSDALEAFEAFAKCKDHGFAKEYATYNLEMPSGKMYTKNFNQIGLVSAK*
Ga0114340_100145249	F043387	GAGG	MMTKWDTIQADISDAYRHLDELEALDKHNSETLFDEDIISLDEIIENELTLDWESAE*
Ga0114340_10014525	F001280	GGCGG	MCYECGCESVGSETGIVSAPMLDVTRDGEAGLTLNMTATPEQRTSFINE*
Ga0114340_10014526	F001176	N/A	MSDNGTGMQTPPNNEPAGAVTSQEATRKNPNQGKFRSGIANQRSMTRIDRNKHGIRRETNLGAKKTGRPKKV*
Ga0114340_100145263	F010085	AGGAG	LRQIQYVSQYIALSEEGLVPRLECPMDQGLLQPNLDLDDNIYLYCLSCSYKNFIGEKLYNSIKEKVDSNV*