Scaffold Ga0114340_1001419

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001419
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18886
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (52.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F006785	Metagenome / Metatranscriptome	364	Y
F022402	Metagenome / Metatranscriptome	214	Y
F100424	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100141914	F001841	AGG	MRVAAWLIWREPVAKPEPAPPKRPRKPTLGYNVGDIPFELMAVVRIAWYRKGMTYEVEEYQIEECPDAHAQFHYIVGTALKQGADVCVLTQYKPEDLGVPT*
Ga0114340_100141925	F004722	N/A	MSPARTGRELVMEWLVREVRQAKTADLHRAAAFLEWARGIRKGCSKQRSGARAAQSNAWRKKVDDDVRWGV*
Ga0114340_100141927	F006109	N/A	MTRYVVMAGDRWITAVYGPGNGIGYTRTKEDASTWVTYERAVAAARVVAQCTDSPVAIHSIEEPNYPKSWK*
Ga0114340_100141930	F003805	N/A	MRPIEHSTESSFHKAATDQWLIDRFNSGDYRGLLEAALILNTLHQLEKTKATWAIREAAENLGEQFGLDRDSA*
Ga0114340_100141937	F022402	AGG	MPAWLWRSIVATSMAIVVVATTQWASCRFYTLPKIVWPWYAKWVGTPQGRMIDPAPMGCTDTDTRTITVLMGVLTTLISLSRKAE*
Ga0114340_10014195	F100424	AGG	MPTYGNRPLGPLQRNWLNFLRHNPGPHFVAMPQRDQRIAESLQARGLITMAPATITDLKGLPVFVVEALEVQP*
Ga0114340_10014196	F006785	GGAGG	VSGGDWNTSRERKQLALDAREMEREQLRLEKRQLRDLRWAVERSSLAASDWADLLALQAAHGKEGPLQLWRELVPYWRACQRCNGGADIPAELFPQAAGIFPRTDQPAKAPANRTRSSKGAPRKVRSDAGVARKRSSKGAA*