Scaffold Ga0114340_1001244

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001244
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15953
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F075866	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100124412	F066704	N/A	VQFWKTEAYLIANKITGGNPISKDLVSHVYLLVYELSIQSEDLPRVFARYAYNQYNWRDSSFNKLFKSHEELPELNLKSEDEYEVSEAQKLLDDYLHQSPSDDQKLFTMEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLSDYNITANRICESSPEL*
Ga0114340_100124415	F065712	N/A	MQAHISESLAGLDRGLIQKYKLTPYEVCTWEAVFMGMYREDDLAMLATHMGGSTIVWFGSDAKDLPEDWVKFVQDSVNIAVSHQVLQTLESKGVQSIWCPVNAVIPHEWPLVPSGNKIFWYSGNTPEYYGESLINEIKERIDIPIIRAGYDTFTKEELVDVYSQCFLNLRLTPHDGCPNTNIEMGLMGRRSIYNGDLPGSIPWKSVDDICQSIMREYSTRHVDNSYISKLFHNFINYERMSTLFI*
Ga0114340_100124420	F057881	N/A	MKQLDIKLPTTLANCTPVQMTRWLMMAEAMKEQKDDITQLLIFQCQLLSLFSGESINKIKRADIESIQVAANHLLQLLVSYNYQEPKSEIEVNGKMYYFEKNFAHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNEHRYKEFLEHFPGDEFLNFFSFFLDLSEKRRLAILGIQMARQRMEMMMMEQDLKIQSGLIGPLSSIDYPKKWESVWQRLHNNLM*
Ga0114340_100124421	F075866	N/A	MADFDFLEDFGITTQEAEQPQNAYDKFITQLSTRLATEFRDYTKKVAQNTGALAASIIPLPTGTLSFRLEAEDYYPFVDEGVNAVGTNNFGSRFSFRYPGVSHNMAKAISQWKGLDMEHAYAVSYNIKQRGLRPKRITDNVITDEVLEKIGKDLAELTGLMFEINFTRNGSNNI*