Scaffold Ga0114340_1001186

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001186
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43944
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002286	Metagenome	574	Y
F026223	Metagenome / Metatranscriptome	198	Y
F047572	Metagenome / Metatranscriptome	149	Y
F057193	Metagenome	136	Y
F100352	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100118612	F047572	GGAGG	MATFKKGDTVKLVMAVPQGPIESLRMDEDGVVQYLVSWTDSNGVTHNRWFDEDQLVTVK*
Ga0114340_100118616	F026223	AGGAG	MAKHEDVAQDKPLMKKIAKTEVKAHEKKMHGAKKMAKGGVTTEQMKTLGRNMARVANQKTG*
Ga0114340_100118657	F057193	AGGAG	MIETIDHKKIFAWINAVWAKSLAAVVMFVLGIWIGQVQTESRVIGDCKYSGAFRVDHQAFMCQRRI*
Ga0114340_100118672	F002286	N/A	MAYSQKIIDSIAAAPKSLGNQLGRWAVHLDFPVTKIAYALGVTRQTVYNWFIGKTDVFIAYEERVDFLLKIMKASKSADEAWRKICQAYGLKP*
Ga0114340_10011868	F100352	N/A	LNIKVKLMPNYAIIENGKVINTVVAEADYAATKGWVELTSGGIDWDYVNGQFVDNRPVPVVVTPPAPTKEQLLAELQALTAKINAME*