Scaffold Ga0114340_1001130

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1001130
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18837
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009072	Metagenome / Metatranscriptome	323	Y
F010017	Metagenome / Metatranscriptome	309	Y
F012110	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100113014	F012110	N/A	MTKALLLLAWVPLLSFTTPQLIATEHPVTISCDAAWELMDIVKNDDVVIQKVEDRLLLELRKDVVNKC*
Ga0114340_10011303	F009072	N/A	MKKYGNEDYFSVIEITTGRKICDCSDEMDALMMVSFSPKNRTITKNKFMMGQVIDIEMPKALPTNEIVIDTRKYQQHQDDWIIEKINQLPQIKLPEGEGLPVIV*
Ga0114340_10011304	F010017	AGGA	MNHRKRRQSENQKKKRMFTPDGYINDPQDAVCPHCNKKQKPCSHINSLSRAWARDACSKKIKTSKNNDKTSSN*