Scaffold Ga0114340_1000995

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000995
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18089
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006019	Metagenome / Metatranscriptome	383	Y
F012116	Metagenome	283	Y
F014840	Metagenome	259	Y
F083892	Metagenome / Metatranscriptome	112	N
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100099522	F014840	GGA	MIPFSYAILDDDGEVVRKHRWSAREAKWFKDNNPNVTVIKLEKQIIKEDLYALVGECLY*
Ga0114340_100099532	F012116	AGGA	MKPLAWLVEEFDSTGKLVWSGLMTAEPTELSWFKDLKSKLHNVTITPLIPDTKKIIKVTNIKKYDSKKLTEAHGGL*
Ga0114340_100099535	F100665	GGAG	MTKPYIKVVSIKDTKVGDCKLTLDMNQAGREIILQAGIQKALSDYVVENSKKLSFWNKLQICWNILK*
Ga0114340_100099545	F006019	N/A	MTFITENNIANLYDTLIQFPVFDEYKLPPASKVDFVVVHDDTICGQYEPPEAGEPHIITISTAKCGHLDTVIKTICHEIIHMICYLESPKTEKYTSHKGLFLKLQKRVANTLGYDPKEL*
Ga0114340_10009959	F083892	AGG	MINNFDYGYDAGLNALEALSLIKENPDHETLAGLLSSIMNCIYYYAPSEKAASELVKFAVDFAIVENQKIGMYLPKGA*