Scaffold Ga0114340_1000871

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000871
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23224
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015965	Metagenome	250	Y
F018874	Metagenome / Metatranscriptome	232	Y
F024254	Metagenome	206	Y
F089863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100087114	F089863	GAG	MCEAYAAQQLAMNTPEEAWKDWASGLKAIDIFVNEGIPGPYIYENWQDWAQALVGAVNESTQETAT*
Ga0114340_100087115	F024254	AGGA	MNFIEIFNYVAKVARPAHAKVSIAESMEDVFQEIGLDSLDGLVMLMYFDELYGIDDAVSKEWTPKSVQELHDLVMGSKTKEPASMEEVVEVCK*
Ga0114340_100087117	F015965	AGG	MLVDSKKKQLTDNAIVMIAAQETKSPHPASTVYAALVKEMNMPGTSLVRDGNTLFIIHVGEGRTGIFRALNADTARNYLENSYAFIQGAYKMGFDVLVSEFEDPTIFNIFKAISRNPPQEGMGYRAERTKKGFRVTVKLGPKRAERE*
Ga0114340_100087127	F018874	N/A	MLERQQMLEEALERAETGVATEDDWNIIRHECGLSKRPIVTLETVTLTRSE*