NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000788

Scaffold Ga0114340_1000788


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000788 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22408
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020540Metagenome / Metatranscriptome223Y
F021534Metagenome218Y
F027747Metagenome / Metatranscriptome193N
F030080Metagenome / Metatranscriptome186N
F030669Metagenome / Metatranscriptome184Y
F087189Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100078815F021534AGGMKTQTENEVVHFLQELLHPEGFGWSVTAEVRKESKRLLIMIESESNEQDSAIRQSVRNV*
Ga0114340_100078816F020540N/AVFETFDPSNKNHRKIFHDVLRYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGKYYIEKEFGVLIDDDPFLNAEIRTRPNPCPHIRKKLK*
Ga0114340_100078828F087189N/AMKNLSTLHSIVALLIMCNFAHAEVTLVEDNSSTNKVYMAKVISKKPIIEKVPYMATKNYCEKHYGTVHYSGASVGTPVILATTPLNQKPICNLVTHEEFYNVVKGYQVTYDFKGTLKTAILNNEPSDYVQVYNVP*
Ga0114340_100078829F030669N/AMYYVYGAIGSKATEKTELLLNICKRRYKLFILGEDYTVAQLQKLIPNTNFVPHIYHEFKYVGGINELHDYLYDELRTQND*
Ga0114340_100078839F027747N/AMVLNMITYKFYVGKDVYEFTAESKLNAMEMCNRQVIDKLDLHPMAWFDAGQNAFSCQSGNFFIARYPT*
Ga0114340_100078844F030080AGGAMYIDGMGPRQSMAVEILDTVRFGGLDKIKGANGYSKKRLDKGDAYVIPFGLNKNIFGAVVISAPKRLYITYKINGVAETVRLKYTWEV
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