Scaffold Ga0114340_1000758

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000758
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27819
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002009	Metagenome / Metatranscriptome	604	Y
F004760	Metagenome / Metatranscriptome	424	N
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100075814	F002009	GGA	MTPPTIEELGKAAEDIVWRVMGKGSEKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFTWAQVKKEVPRL*
Ga0114340_100075828	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSETLTFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVSYDQSEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGIAQLDLYPRLETAGTISLRVVEKLKCLTRTNIVVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQTVVQTANADLAAMANYELSQVGGIKQITPSSLGDLSIEEISSS*
Ga0114340_100075836	F086661	N/A	MKQYIFENGQLVSVVDNRSLAEAISLNIEVNREKATQAIQAAGLDESTQQNAALGIYSPERCEAIKSYISACRNEYLRCKALILAAQTNDEADAVQFVAPPVPEGI*
Ga0114340_100075840	F004760	AGGAG	MPIYQYEDTRNGSVVELEKPVAERDSVPGYLKRFQVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDSIKRAAAQRR*