Scaffold Ga0114340_1000737

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000737
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22255
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100073728	F004110	N/A	MAVGLMSNIHPIILEVAPSVSYVVYRRYKAFVEKDDIYQECIAWAMTRTDDFDEMLNVEDADERRHNEQKIAWRMRRVAERYARKEKANKSGYQTSDEAYYQTATLGQLLPYVIASVLDGTVLEQAQEMIIDGQPKGSSSPAEGGTLLASLIDIKKAYLLLEPEDQNLLRYRHHDSYTFKQMSALLECAISTADRRCSVALRRLQDNLGGETPWK*
Ga0114340_100073732	F041090	AGG	MRSETTNGSQENIVALSDIRSERQRALSPYGPVSQGLTTSQRTSRDQALTELLNSLENAVADLNSKSYTALDTLAIAIQGARVALSATATDEAGIDADRG*
Ga0114340_100073735	F040536	AGGAG	MDKLGKVIAFHPVRSELKLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN*
Ga0114340_100073736	F055552	GGAGG	MNKEYWEAKAKLCQQVGIEQLIVGDIPNGTRNLKRMVRAMEELNLIKAVEEDKPAEDMWASLITNGLLLAGEDKSNG*