Scaffold Ga0114340_1000672

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000672
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35517
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (55.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002317	Metagenome / Metatranscriptome	571	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F006785	Metagenome / Metatranscriptome	364	Y
F021513	Metagenome / Metatranscriptome	218	Y
F068609	Metagenome / Metatranscriptome	124	Y
F073486	Metagenome	120	Y
F095168	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100067225	F073486	AGG	MTTTFHWTGSHVSGSRACAVVRYAGATDTRGSRWLATIKRDSDNTWRASATYQEGPITAALRAASKAGVEWQAVTCHSIDSDTYCVGF*
Ga0114340_100067226	F068609	AGG	MTIFRTTEPRGTFRVTYATVTAESAEQGDYADRGWLSWNGSPADEYSDSVWDLRDLTEKLAGCYAEGTGERVPSWISLDPGSDFWLSPFWRDLAGEDALGVTAYVHRPDWITDASWLRVCRLLGWRWRY*
Ga0114340_100067227	F006785	N/A	MSQGIPSAEPRQDRTMSGGEWTTKGRQREAREAEREQLRLEKRHLRDLRWAIERSTIEASDWTDLLALQAAHGKEGPIQLWRELVPYWRDCQRLNGGADIPAELFPQAMGLFSRTPEPAPAAPANRQKAARGVSRARKRRSDAGKAQPSRKAPTA*
Ga0114340_100067233	F001841	AGG	MRVVAWAFWRDPVAKPEPPQPKRPRKPTLGYTVGDIPFELLAVVRVSWYRKGLAYEVEEYKIEESEDAQAQFHYVVGTALKQGADVCVLTQYQPEELGVPV*
Ga0114340_100067238	F021513	N/A	MNMYILSEAQFDQVIKALDAARFALDTCQHVELDLTNSKQTIPLPAGECIVRTKSVQKPESQSKTRKSSRKGKRGVSVLTDVKVLEIKRQLAAGGKSVGKIAKEFGVHPTTINCIKWNKTWKHVQLQQEIAEAAA*
Ga0114340_100067246	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGQGIGLTASKEDASSWVTYERAVAAARVVAQCVNSNVAVHSVDEPTYPRSWK*
Ga0114340_100067248	F003805	GAGG	MHPIEHSPESSFHKAVTDKWLVDLFNRQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGMDRDSA*
Ga0114340_100067253	F002317	N/A	MDNHEEAQITVKPPDNPFNQAVPALLTASVIGLGGLFMQVAKLDQSVGTVAADIQELKNDSKERLSDLETRVRHIEMTVGNKK*
Ga0114340_10006728	F095168	GAGG	MTRDFKNLINDMKELVNKSARNAAVEIVNGLVEAGPAYSGQFSSAWYAVEPGQSPGGPRSAGGHTYKYNLRNVPQARFRSGTYYEIVNGASYAAQALDLDSGVFKTQYDNDGNILDPVKDPVAVGTRTGSKRGQVSSGTGFAVSTAPLDWYVTYTSGGAMQRDLGNGVRLGFRQGPKGGNVPGTGFG*