Scaffold Ga0114340_1000658

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000658
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36781
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (80.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F034856	Metagenome / Metatranscriptome	173	Y
F066716	Metagenome / Metatranscriptome	126	Y
F079990	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100065810	F034856	AGG	MTQYIFTTPTVTETPMGDGPLFSRYNINKGVSVLRVNGIYSSYRYPAQTDIATATEFYLGGTKTLITQETADALTAQGYGEYITPA*
Ga0114340_10006583	F079990	AGGAGG	MKKALKKGYSKKPANQGSAGKPNVQKPMMAKKASSKGGKVYQTTPPSGTRGSKNK*
Ga0114340_100065839	F001515	N/A	MVKNSSFDLDFGFGRKGEQLVEELLTEGKKVEVKRDRKWWVTNNLYIEIECWFMKSKSWEPSGIMVTEAEYWAFVLEKGVLIVPTSHVLYAIKEFGREITCEIPPNKSKGYLITVDDLLMAMRKLKNE*
Ga0114340_10006584	F066716	GAGG	MAEKANQNFQVSATGGAGSGGQAAQYAAGIDNAGDFYELQTQATMSKSGVQLPNRGNPVTPKMPVGDIVPLNAPTLYPEEGVDTGAALGPNAGQEVMAAPAMLAAQNNEDIAALAAYLPFYAKVAESPQASNATRNWYRYIRSQIQGQAQ*