Scaffold Ga0114340_1000545

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000545
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28983
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (85.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F005233	Metagenome	407	Y
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F023041	Metagenome	211	Y
F085230	Metagenome	111	Y
F087179	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100054519	F019448	AGGAG	MTAMTKTQMVNACVDYEVDWFFDQTLEEQKEVYRHLQLHGFTGFKNVPDHNLFASCVDKGIFLMEE*
Ga0114340_10005452	F005233	N/A	MLEHLINGEFEPDVVATTMATPLPFAQAAPADIIDAQVQTAQWLKDLGLDDEEVESKADAQAARSSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERVEVKKTQMSDVELETRIKEKLNRFMGVIDVVDVAEDQPDEA*
Ga0114340_100054521	F085230	AGGAGG	MKVKELIGYLQQCDPETEVYTFNDHEIHAIECVDASMTEWVHLNLGERQ*
Ga0114340_100054523	F023041	AGGAG	MNNPPYDTGKVKIGLTYTPPPPESTPESDWIQGVLLGDKQGMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0114340_100054524	F010672	AGGAGG	MPDMQTALKTALTRTLQEWDDDGEISPQTPTINTTINNSVPTPSQGIPMKKTFNITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNKMIHETNNLYYADIAEYRPIKSLKALKKLEAPIAPPKRKYEKKAVTGIGALLREKLENMPVSSQDALDAAAYAMGGHTPKRVISLVRVKSPEDILKDMTVYQAHDLYRHLKQMFGN*
Ga0114340_100054529	F002653	AGGAG	MNYADFDGSMSEAELHRRVTAMSDEEQAHFKLLIHKLVMCYGDGNAQGVVIIGRAEDALAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0114340_100054531	F087179	AGGAG	MKYSQSKELVDELMNIAVLFHASALLRTKIADVIDKHIPDLDPACMERGCTAVDDYKEKNVSTL*