Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000464 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49236
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (76.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

49236

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (76.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002766	Metagenome / Metatranscriptome	531	Y
F017819	Metagenome / Metatranscriptome	238	Y
F033010	Metagenome / Metatranscriptome	178	Y
F054562	Metagenome	139	Y
F077027	Metagenome / Metatranscriptome	117	Y
F098638	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100046428	F017819	GGTGG	MRKRSKYRPRQVLQNPLDFVLSGLKPVRDLPNVYLDVQLRNRQALEQVRTGHATRQDIDLLIGAFNIAEALAIQGLGCDWIAEINAAQNDLLELARKGVARDMRFTMNAQQWESLRLVLDLHEEQLANATVYDIEKAHDFVLAVIRKGKARAIVETQKETT*
Ga0114340_100046432	F077027	AGGAG	MNFNLNIHRVKGIRLSEVRVSKVNGGRHASRDLIIETSDGDFELNLFSEHVDEDNDQELLEVKV*
Ga0114340_100046441	F098638	AGGA	MTSREQFELDHFNIKPAKVGKRIPAFWIHQAPSAWRKSMKYWAALMLGIVLGAIGAGVLAVFVGVVR*
Ga0114340_100046454	F033010	N/A	MVELKVVKRGRKVNLSPHQVAFHVKHADLNCPTYILVQYFPPGTAHAHKSELLLYCGEQAIELAERGIDTAALARWPWTGISWPALRSHLVDS*
Ga0114340_100046461	F054562	AGG	MSAPARLRLVQLVHLADAGLVRVAWSATWSEYQVRATGPGGRLVAEYFTDDKGDALATAERMLADLADLAGIPA*
Ga0114340_100046467	F002766	N/A	MEYTMLEFAEAVLKEIRKLQEQSKQIVLNGTISDMERYRFMMGRLEGLRMVEDSVKDLLKKVTDDDDLTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000464

Overview

Ecosystem & Geography

Associated Families

Sequences