Scaffold Ga0114340_1000423

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000423
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50509
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (46.15%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F001968	Metagenome / Metatranscriptome	610	Y
F002243	Metagenome / Metatranscriptome	578	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004314	Metagenome / Metatranscriptome	444	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F027748	Metagenome / Metatranscriptome	193	Y
F037598	Metagenome / Metatranscriptome	167	Y
F048268	Metagenome / Metatranscriptome	148	Y
F054801	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100042319	F037598	N/A	MTRTNVLPLDLCTVTLTEAQWSTIRTAVLCLAVDCRTAGKGTDADYYLNAYNTLKQAMGMED*
Ga0114340_100042324	F027748	N/A	MSTATRLTANQAKSAIYDLADDFSWETVAKEMIARMSGDEARDFLEDFQRLYAD*
Ga0114340_100042333	F001968	GAG	MFDELWQEIQDMPGEIFDMDIPELREDNKFDVNEYLNANYDY*
Ga0114340_100042336	F004314	N/A	MYDDYDFDYSYTGNDYADLDEHYTLDVRDLDEDYARDGQDYQDLAYRHYA*
Ga0114340_100042347	F002243	GGAG	MPDFPTLQSKDGTMLVGYYPLQDSYGDISTEWCVQILSWKGIDRISKKYLNRVEKTLAIRDRLAHDYVVTGDNQNSPQEGNPFHGAC*
Ga0114340_100042348	F000744	GGA	MKDVNVNLNVQEIGILLSALQDLDNVDEIRLSREYGSASALYNKLYSLWERMDTSETGLRYDVVPSF*
Ga0114340_100042352	F048268	N/A	MYLSTQSVSKIADALKPAVLEYIHADEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK*
Ga0114340_100042357	F004898	GAGG	MDLSELIEELREIEIYGSEPSDWMGYMGSDDYWVPDSELAY*
Ga0114340_100042367	F000345	GGA	MTEESKKPNDFGKAMQEWWDSDAFKKFQKANKEAKERAIGKYFMLSEEDRIDMVEAITHIMCKAEREGTSHRGLQSELGIYPGGFWVDHLMDVHNALWSYYHDQKKEQELKDDLDALEDFMK*
Ga0114340_100042377	F004546	GAG	MDYTEEFPFDQFPWKLIHKDGKETRKCYFQTEEHRKKHIDRYNLKKKDIQLSYKYDN*
Ga0114340_100042379	F007569	GGGGG	MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHQCGEILDELFDVVYTQKQEQPT*
Ga0114340_100042386	F004208	GAGG	MTYSLNQEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMVVFDDYFTNFCESDNNGGHCVYERDATDFTDFVRFKLGIDDYDAVDVDEVLK*
Ga0114340_100042387	F054801	N/A	MTYKVRYNGFGPYKDKFEINQIFTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVE*