Scaffold Ga0114340_1000421

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000421
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29334
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (75.64%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F014250	Metagenome / Metatranscriptome	264	Y
F028150	Metagenome / Metatranscriptome	192	Y
F038205	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100042110	F000473	GAGG	MFIDKTAEKQAEHFKYGINQWTGEPNKPVFYTKEMALKVREIKKPVADLLMDIVQYPDFLAIRLYEDNFVMYDGIKKEMVIDYVSKIKKLIESYGVRCELEGQPSRGIL*
Ga0114340_100042112	F000671	GAGG	MEKVLCYSCNKSKNKLNVKRSVLFPINLLMCESCVLAKFEPRWVLILAGRQNGPDVVKEFIIKRKYLGEEISAAELLV*
Ga0114340_10004212	F028150	AGGGGG	MNWLKKRAIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKEEE*
Ga0114340_100042125	F001280	N/A	MCVECGCQSVGSETGIVSAPMLDVTRDGEAGLTLNMTSTPEQTRRFINE*
Ga0114340_100042126	F001176	N/A	MSENGTGMQTPPNNEPAGAVTSQEVGRKKPSQGKFNSGLRPPTKIDRNKHGIRRETTIGPKKTRPKKV*
Ga0114340_100042145	F014250	AGGA	MRDIHTEFHPRLQKLVDLGESGTDILHGELKNLLLEAENQLILAQAQEEETEEAMDSMERTYWEGQMDALTEVYALTYNLAFAINERSKANG*
Ga0114340_100042148	F000868	AGGCGG	MSFLENENQMVIDAIYSEIGEQLVEDWTNSNLDEGQMYADWCFADMSGDNYIKGRFNLFYDLKPEDQYYIEWNEEK*
Ga0114340_100042152	F001043	AGGAG	MSDYKDGFQDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGKL*
Ga0114340_100042153	F000311	GGA	MYFELTAPDRLSMEMAYWDAQTMGLDPEAMSPLTFNVGTGSIEKVSRIRDKHNLVESYVSEYEPTGYVRR*
Ga0114340_100042163	F002071	AGGA	MNTTLQVGQTYTTTQSGITGVIKAVDNHPSGVNRILLDVEGKERWTSVSAK*
Ga0114340_100042165	F003663	AGGCGG	MLSTAIELLEVTKESVYDDEIMGLAGELHTRRNELSDDVFAKYLFMYSAALSSKVADGITRVLLTEEQMSVLCDTIAEMDNLTETILEEDNNGE*
Ga0114340_100042169	F038205	AGGA	MGNLAEIIGVACDECGGAGFIFFGDENNYDVQSCDCAEEAWGI*