Scaffold Ga0114340_1000355

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000355
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41116
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005054	Metagenome / Metatranscriptome	413	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100035525	F004006	AGGA	MTNDIEQLVASISLNKVLIAILEEHKQLSVPTLRFLESKDTDKELVIDYDESGPSFTFSLKEREQENDN*
Ga0114340_100035532	F001464	N/A	MVRTKRQRPRKKLLYFFLNGKIHKVVRASKARDELVAWCYPDKKRVMYSYSQVKKNMGNAYTIKQVCEILGRHRVTVEEYILQGKIKEPQRVYPISNPDSSWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGGFVPVWKAE*
Ga0114340_100035544	F006841	AGGAGG	LATTVYDVEEITLQNGDKVKLKPLTIKALRKFMAAIAKTATSQTEDETLTILIEACAVAIESQLPELAADMDKLEGALDMPTINRILEVCGGIKLDDPNLGAAAVLAGQNSI*
Ga0114340_100035546	F000258	GGAGG	MTVNYKLDAMLELRKFLWGRLTTLNIFDDEDYYSDNLGESIIPILPVQQAPEMNQFLSGKKHIVYDKIGSSYEDNWMVCCEQILFTIYSTDISEINEIRNFMMDEFRRMDESARDINRWSGLSDKFKFYSIFIADISPTEPSEELQGFFSTDVILEVKYSRMVDSVGRFS*
Ga0114340_100035548	F001229	AGG	MYDLIDSVLSMKMDVYRQSDLQDPDTGAIVKQWNYYKTIDCHAKGIISNSATTRSSDKQIMSNKYSNEQVIQVRTLERVLFREKVTNVRNKDGLVIWSEINFPTETPTVFEVMGSTPITDPFGEVIAWNTTMKRSENQQIGL*
Ga0114340_100035549	F005054	N/A	MAEVLIRTQSPVTHQVFWNGDIATPDSTPIVKLYDITDDPAINPLINPTQLLETLTAVLDENNPGTYTVYVPYEYTDRNRTLRLQWEYTIEGTNVARTDEVFVVTPYVDFNHVQDLGFSTDSSDPNYRSYKDLVRAEKYARKQIEQYTGQSFFLYDDVFVLNGYDSDTLPLPAKIYELHELYANDILLLDTINEIDNWNYSVQISETGYGIKVNRANALDNTVYTANGMVPPTINDSSGIFQDNVSYKVQGRFGWERVPDDVELAAIELMKDYFSKDTTWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVQVI*
Ga0114340_10003557	F000376	AGGA	MSEYQDKAKECKCCGKHVPLPTVLKEYNGITLCPTTFANVIEYKRIWKNLGNRPIGSIRKHFSDYVQQIVEQTIDKNEDGSLQ*
Ga0114340_10003559	F000369	N/A	MDIELTDHFDRMNKVVSELLKGSNPTQIATITGMPRKDVVELIDEWKAVVHNDTTARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAEIASQVAEAERKQELLVKILKEVTAQCSKCKMEVAKRLSQITGVVESIVIEDASGS*