Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000334 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36695
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (13.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36695

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (13.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F009005	Metagenome / Metatranscriptome	324	Y
F023789	Metagenome / Metatranscriptome	208	Y
F029999	Metagenome / Metatranscriptome	186	Y
F067745	Metagenome / Metatranscriptome	125	Y
F068458	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100033424	F029999	AGG	MMIMYNENPFKSFSASKMSENQRFNVSVEYINLFGKTIRIQCKSRKAFNEARQFLSIFKSETAKLNSILCEYPVKMGKFPKRFHSEIKSDLTANGFGSIVKFILK*
Ga0114340_100033430	F009005	GGAG	MLQRARQIGMDEELVSYAKQIQRQLSAEGDTADWLDCLEMAYNELIVN*
Ga0114340_100033434	F023789	N/A	MDTNHSHNLTQTQRVELQTKIQRLQWLLTECIGLEEYELCSQIRNVIAQKYELLSTNQTNNEIE*
Ga0114340_100033444	F067745	N/A	MSNINITPDNGRLTMKGSGLVTINTSIKIYGTGTELPIKIVADFNNIPHNLHQTYLQALTYQYNTSVRVHNNTDDEPKTVKEKKSEWRINRIVDIISKAISK*
Ga0114340_10003347	F068458	N/A	MLTIENYKKIKNRWFSDWQIGKIIEEPTHYALQAFHTSGKRSVTIVIFREERVEGEYFEIAYKIAMMDDNLGSASTIEDIIYKSVLEDMEMFGESLVHYLNTI*
Ga0114340_100033483	F005630	N/A	MANLYEVDGFYGTRNRGTIFVYETRSGKRWYCVEGSCNINCTYDEIVDGTNVETLSDIDTMSSRSGIDSVNELYDFVIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000334

Overview

Ecosystem & Geography

Associated Families

Sequences