Scaffold Ga0114340_1000324

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000324
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33165
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (36.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100032420	F048940	N/A	MTAAQRMEKQFFMNFITLVNEVQGKQKLPSQVGSYRKSSWCKQVSNPKQKKDALARI*
Ga0114340_100032423	F015080	N/A	MFEQLEFEAHSIPGAIQGRYKFRNDWSISVVAGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMKVLVQL*
Ga0114340_100032424	F058096	N/A	MNTELSIGECKIMWVVGALERLATLGLIGPDVPLKLTGNAVDDYLQIDEHRELLFESDFEIASIFTALANDECDPELQNPEDTKPIIDLLLEYKDNRTEIVKYALSQQFV*
Ga0114340_100032426	F084145	N/A	MFLSCPVSFDLIDAEWYQDVDNAKEDALDWSVELSGETVFVYQAVEGEDGEYEFNKLYSICA*
Ga0114340_100032437	F091925	N/A	MTSISFTSGELLDIISALEEKENALYLAENYQLSAYYMNLGVQFQKVYDKLQEVAGEKRVAKLVLTVN*
Ga0114340_100032439	F027828	N/A	MLIGFKSVKMTELITETMLDTVLTIEEILTEKQLTALRDIMYFYKEFELELYEYPPEDTLFTKTQRELFDIFDIK*
Ga0114340_100032442	F061794	N/A	MPFSKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGKHLLKKYISNLS*
Ga0114340_100032447	F081258	N/A	MTITFPRLSAGIYEVQQDSNTVGFIRKASASKWIVADVVDTPQHVSKTLKDAKDACINLIIFESVDSTPADEYNESVDVDKVNPELNKKLEGSLNCYKQVPGTDEFVKVCPSELGFAKPTLEPIEF*
Ga0114340_100032459	F093764	N/A	MARRNKSASRQMVENLQDQLVEYFQENVFDDCDYEDLTGSELLEALVGTFREIESEIQKKLNPIQFVLNKLDPEDSESQVLNG*
Ga0114340_100032460	F073458	N/A	IALASEIVDTNPAGAQLIANLTKAETGAELLEALDNYDSTVLENYSEPVDSEDDGYVSLTDADGTVTYV*