Scaffold Ga0114340_1000303

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000303
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34511
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011583	Metagenome	289	Y
F011667	Metagenome / Metatranscriptome	288	Y
F012573	Metagenome / Metatranscriptome	279	Y
F020497	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100030331	F020497	N/A	MANLIKLESINVWAGPLGIMSCDENGQPILEESKSWSNIEPEWFQNLSNEDKEKVNTIINNKNN*
Ga0114340_100030337	F012573	N/A	MTKDTTKDWMDRLVKNYRIPEEAPKEKKEPVRLLKESQLRIIMERDKKDLENKKK*
Ga0114340_100030340	F011583	N/A	MKPYFDYWYKRTLKDGLKAIRLVIGLGLAVSFGYSVNLPIGIMVFGYVLVDTLIDKN*
Ga0114340_100030344	F011667	N/A	MILSFNLTMIYLMKNITMNIENKIKDVIDILEDAISFEDWKGVENARKELTFLFEEIESSFPMDEFDDEDLD*